Fix review findings: importer DoS, sync data loss, views/profile rendering, docs

Source importers: lstat before open so FIFOs no longer hang the directory
walk; replace the quadratic Rust macro regex with a linear scan.
Three-way sync: report page add/add and delete-vs-modify as conflicts
instead of silently overwriting or resurrecting; canonical comparison so
key order is not a change; the sync action withholds output and fails on
conflicts unless --force. Story publishing escapes <, >, & and U+2028/9
inside the embedded JSON.
Views: drop parentId of unselected containers, re-layout instead of
manual geometry, validate before serialising; flatten() merges identical
nodes repeated across pages so C4 output works with every analysis
action. Dark theme edge labels get a background; tube-map corridors sit
above the stations; C4 containers keep the swimlane style and orphan
relationships land on the matching page; router keeps container header
bands as obstacles; sequence self-messages loop on one side.
Docs: SKILL.md lists all 23 CLI actions and how each capability family
is invoked, task wrappers for query/test/what-if/doctor, capability
tables and --page scope corrected, maintenance snippet uses the real
synchronous action signature, duplicated rule bullets moved to the rule
references, coverage matrix wording made verifiable.

Co-Authored-By: Claude Code <noreply@anthropic.com>

references/agents365-capability-coverage.md

@@ -1,6 +1,6 @@
 # Agents365 capability coverage
 
-> Evidence basis: clean-room behavioral comparison of 42 peer tools. Peer source and bundled assets were not copied because the inspected mirror had no complete license file.
+> Evidence basis: internal comparison against a 42-entry peer-tool feature list (tool names as listed in the matrix; no version or commit was recorded, so the comparison is **not independently verifiable**). Peer source and bundled assets were not copied. The "Native evidence" column points to files in this repository and is verifiable; the "Remaining gap" column reflects the internal feature list only.
 
 ## Reading the classifications
 
@@ -32,16 +32,16 @@ These are strict peer-parity labels. A `partial` row can still contain substanti
 | `ciimports.py` | **partial** | `scripts/src/services/source-importers/index.ts`<br>`scripts/src/services/source-importers/index.test.ts` | The service imports a bounded generic jobs/needs object, but lacks CLI registration, repository workflow discovery, triggers, runners, matrices, reusable workflows, GitLab stages, and inferred stage dependencies. |
 | `composeimports.py` | **partial** | `scripts/src/services/source-importers/index.ts`<br>`scripts/src/services/source-importers/index.test.ts` | Services, depends_on, and simple named volumes are covered through a service API; links, volumes_from, long-form mounts, network grouping, conventional-file discovery, and CLI exposure remain absent. |
 | `compress.py` | **partial** | `scripts/src/services/profiles/compression.ts`<br>`scripts/src/services/profiles/compression.test.ts` | A deterministic BFS clustering service emits summary and full IR pages, but there is no Draw.io-facing action, exact loss-aware detail-file workflow, label-propagation parity, or member-cell drill-down target contract. |
-| `dbxicons.py` | **optional-deferred** | `scripts/src/services/shape-catalog/shape-catalog.ts`<br>clean-room 42-tool mapping audit | No licensed Databricks manifest, aliases, variants, pinned-ref embedding, refresh operation, host allowlist, or CLI action was delivered. |
+| `dbxicons.py` | **optional-deferred** | `scripts/src/services/shape-catalog/shape-catalog.ts`<br>internal peer feature-list comparison (not independently verifiable) | No licensed Databricks manifest, aliases, variants, pinned-ref embedding, refresh operation, host allowlist, or CLI action was delivered. |
 | `diagram_ir.py` | **partial** | `scripts/src/model/diagram-ir.ts`<br>`scripts/src/services/semantic-lifecycle/import-drawio.ts`<br>`scripts/src/services/semantic-lifecycle/analysis.ts`<br>`scripts/src/services/semantic-lifecycle/sync.ts`<br>`scripts/src/services/semantic-lifecycle/publishing.ts` | Versioned IR, loss-aware import, views, query, policies, failure impact, sync, and story publishing exist, but articulation analysis, a unified architecture-review contract, contrast analysis, multilingual labeling, and explicit peer-IR-v1 compatibility are incomplete. |
 | `diagramctl.py` | **partial** | `scripts/src/cli/commands.ts`<br>`scripts/src/cli/semantic-lifecycle.test.ts`<br>`scripts/src/actions/doctor/action.ts`<br>`scripts/src/actions/sync/action.ts` | Lifecycle actions are registered in the existing --action CLI, but integrated importer, profile, transform, and reverse-export services are not registered. There is no uniform peer-equivalent result envelope. |
-| `diagramctl_mcp.py` | **optional-deferred** | `scripts/src/cli/commands.ts`<br>clean-room 42-tool mapping audit | No optional MCP package, JSON-RPC initialization, tools/list, tools/call bridge, closed schemas, timeout handling, or MCP entrypoint exists. |
+| `diagramctl_mcp.py` | **optional-deferred** | `scripts/src/cli/commands.ts`<br>internal peer feature-list comparison (not independently verifiable) | No optional MCP package, JSON-RPC initialization, tools/list, tools/call bridge, closed schemas, timeout handling, or MCP entrypoint exists. |
 | `dockerimports.py` | **optional-deferred** | `scripts/src/services/source-importers/index.ts`<br>`scripts/src/services/source-importers/index.test.ts` | The importer registry has Docker Compose but no Docker inspect snapshot kind, container/network/volume instance normalization, redaction contract, stdin parity, or action. |
 | `drawio2mermaid.py` | **partial** | `scripts/src/services/transforms/reverse.ts`<br>`scripts/src/services/transforms/reverse.test.ts`<br>`scripts/src/services/semantic-lifecycle/import-drawio.ts` | A deterministic IR-to-Mermaid service exists, but there is no Draw.io-to-Mermaid CLI/action, shape-form mapping, direction/fence controls, or lossy-conversion report. |
-| `drawio2pptx.py` | **optional-deferred** | `scripts/src/cli/commands.ts`<br>clean-room 42-tool mapping audit | No optional Draw.io renderer adapter, per-page raster loop, PPTX writer, slide sizing, scale option, or structured unavailable result exists. |
+| `drawio2pptx.py` | **optional-deferred** | `scripts/src/cli/commands.ts`<br>internal peer feature-list comparison (not independently verifiable) | No optional Draw.io renderer adapter, per-page raster loop, PPTX writer, slide sizing, scale option, or structured unavailable result exists. |
 | `drawiodiff.py` | **partial** | `scripts/src/services/transforms/semantic-diff.ts`<br>`scripts/src/services/transforms/semantic-diff.test.ts`<br>`scripts/src/services/semantic-lifecycle/import-drawio.ts` | The IR service classifies added, removed, changed, moved, and rerouted entities, but no CLI/action composes Draw.io import with diffing, no by-label ambiguity mode exists, and no color-coded graph output or summary diagram is emitted. |
 | `drawiohtml.py` | **optional-deferred** | `scripts/src/services/semantic-lifecycle/publishing.ts`<br>`scripts/src/actions/story/action.ts` | Story HTML is a different semantic publisher; there is no page-to-SVG export adapter, SVG sanitizer, tabbed viewer, pan/zoom/search UI, drill-down link rewrite, or publish-viewer action. |
-| `edgeports.py` | **rejected** | `scripts/src/services/authoring-router/orthogonal-router.ts`<br>`scripts/src/services/authoring-router/orthogonal-router.test.ts`<br>clean-room 42-tool mapping audit | Only routing during authoring exists. The post-import boundary-port editor, pinned-port preservation, dry-run, idempotence, and transactional Draw.io write path were not selected for this post-phase implementation. |
+| `edgeports.py` | **rejected** | `scripts/src/services/authoring-router/orthogonal-router.ts`<br>`scripts/src/services/authoring-router/orthogonal-router.test.ts`<br>internal peer feature-list comparison (not independently verifiable) | Only routing during authoring exists. The post-import boundary-port editor, pinned-port preservation, dry-run, idempotence, and transactional Draw.io write path were not selected for this post-phase implementation. |
 | `encode_drawio_url.py` | **optional-deferred** | `scripts/src/cli/commands.ts`<br>`scripts/package.json` | Compression primitives are available transitively, but there is no byte-compatible URL encoder, viewer/edit modes, size policy, privacy warning, or CLI action. |
 | `explain.py` | **partial** | `scripts/src/services/transforms/reverse.ts`<br>`scripts/src/services/transforms/reverse.test.ts` | Structured Markdown for IR pages, nodes, and flows exists as a service, but no Draw.io-facing explain action, tier/type inference, C4 context, unknown-section reporting, or output-file contract is exposed. |
 | `goimports.py` | **partial** | `scripts/src/services/source-importers/index.ts`<br>`scripts/src/services/source-importers/index.test.ts` | Bounded Go import extraction exists, but it emits imported paths as library nodes rather than resolving only intra-module packages; module discovery, grouping, transitive reduction, and CLI exposure are absent. |
@@ -54,14 +54,14 @@ These are strict peer-parity labels. A `partial` row can still contain substanti
 | `pyimports.py` | **partial** | `scripts/src/services/source-importers/index.ts`<br>`scripts/src/services/source-importers/index.test.ts` | Bounded import/from extraction and dynamic-import diagnostics exist, but relative and absolute intra-project resolution, stdlib/third-party exclusion, package grouping, transitive reduction, syntax-error diagnostics, and CLI exposure are absent. |
 | `raster2drawio.py` | **partial** | `scripts/src/actions/build/action.ts`<br>`scripts/src/authoring/ir-to-drawio.ts`<br>`scripts/src/services/layout/layout-engine.ts`<br>`scripts/src/model/diagram-ir.ts` | Generic IR build supports explicit geometry, styles, edges, and automatic layout, but there is no raster-extracted graph compatibility schema/action, x/y/w/h shorthand conversion, partial-coordinate policy, confidence/provenance convention, or extraction-warning envelope. |
 | `relabel.py` | **partial** | `scripts/src/services/transforms/relabel.ts`<br>`scripts/src/services/transforms/relabel.test.ts` | A strict complete-map IR relabel service preserves non-label structure, but there is no extraction mode, page-name handling, UserObject traversal contract, partial-map/unmatched reporting, Draw.io transactional write, or CLI action. |
-| `repair_png.py` | **optional-deferred** | `scripts/src/cli/commands.ts`<br>clean-room 42-tool mapping audit | No PNG chunk validator, signature-specific repair, atomic in-place replacement, idempotence gate, version gate, or optional action exists. |
+| `repair_png.py` | **optional-deferred** | `scripts/src/cli/commands.ts`<br>internal peer feature-list comparison (not independently verifiable) | No PNG chunk validator, signature-specific repair, atomic in-place replacement, idempotence gate, version gate, or optional action exists. |
 | `restyle.py` | **partial** | `scripts/src/services/themes/theme-service.ts`<br>`scripts/src/services/themes/theme-service.test.ts` | Five validated built-in themes and immutable IR application exist, but the peer-style palette-slot schema, user preset loader, hue/neutral color remapping, global extras, versioned JSON schema, Draw.io transactional action, and CLI exposure are incomplete. |
 | `runbook.py` | **partial** | `scripts/src/services/profiles/runbook.ts`<br>`scripts/src/services/profiles/runbook.test.ts` | The service emits escaped self-contained interactive HTML from an explicit RunbookGraph, but it does not parse Draw.io, infer node types/start nodes/choices, report fallback selection, or expose a publish-runbook action. |
 | `rustimports.py` | **partial** | `scripts/src/services/source-importers/index.ts`<br>`scripts/src/services/source-importers/index.test.ts` | A bounded subset recognizes mod and simple use roots and diagnoses macros, but crate/self/super resolution, module-file discovery, complete brace expansion, external-crate exclusion, grouping, reduction, and CLI exposure are absent. |
 | `seqlayout.py` | **partial** | `scripts/src/services/profiles/sequence.ts`<br>`scripts/src/services/profiles/sequence.test.ts` | Participants, ordered messages, lifelines, activations, return validation, and editable geometry are implemented as a service, but notes are unsupported and no sequence schema file, input action, direction/options contract, or CLI registration exists. |
 | `shapesearch.py` | **partial** | `scripts/src/services/shape-catalog/shape-catalog.ts`<br>`scripts/src/services/shape-catalog/shape-catalog.test.ts` | Deterministic exact/alias/fuzzy search exists for eight hand-curated generic shapes, not the licensed 10k+ palette index; compound/tag/Soundex ranking, dimensions, gzip integrity controls, expected ecosystem queries, and CLI output are missing. |
 | `sqlerd.py` | **partial** | `scripts/src/services/source-importers/index.ts`<br>`scripts/src/services/source-importers/index.test.ts` | A narrow line-oriented subset finds simple tables and REFERENCES edges, but columns/types, PK/FK markers, quoted/schema identifiers, composite keys, schema grouping, crow's-foot styles, unsupported-syntax diagnostics, and CLI exposure are missing. |
-| `svgflow.py` | **optional-deferred** | `scripts/src/cli/commands.ts`<br>clean-room 42-tool mapping audit | No optional Draw.io SVG export adapter, SVG parser/sanitizer, connector detection, animation injection, reduced-motion handling, or export-flow-svg action exists. |
+| `svgflow.py` | **optional-deferred** | `scripts/src/cli/commands.ts`<br>internal peer feature-list comparison (not independently verifiable) | No optional Draw.io SVG export adapter, SVG parser/sanitizer, connector detection, animation injection, reduced-motion handling, or export-flow-svg action exists. |
 | `tfimports.py` | **partial** | `scripts/src/services/source-importers/index.ts`<br>`scripts/src/services/source-importers/index.test.ts` | A bounded line-oriented resource/reference subset exists, but modules, multiline/nested HCL handling, comments/string false-positive guarantees, diagnostics for dynamic expressions, cloud styles, grouping, transitive reduction, no-icons mode, and CLI exposure are incomplete. |
 | `tfstate.py` | **optional-deferred** | `scripts/src/services/source-importers/index.ts`<br>`scripts/src/services/source-importers/index.test.ts` | No Terraform show-JSON snapshot source kind, nested module traversal, count/for_each instance expansion, sensitive-value redaction, state relationship extraction, stdin parity, or optional action exists. |
 | `timelapse.py` | **partial** | `scripts/src/services/profiles/timelapse.ts`<br>`scripts/src/services/profiles/timelapse.test.ts` | The service classifies changes across caller-supplied IR snapshots, but it has no scoped git history/archive adapter, deterministic commit sampling, importer allowlist, Draw.io frame rendering, HTML player, resource limits, or CLI action. |
@@ -71,7 +71,3 @@ These are strict peer-parity labels. A `partial` row can still contain substanti
 ## Architectural boundary
 
 The retained implementation stays in the existing TypeScript/Node.js stack with pnpm, Taskfile, `@maxgraph/core`, and the established action-based CLI. Python, Graphviz, Eclipse Layout Kernel (ELK), Model Context Protocol (MCP), browser services, network icon retrieval, and Draw.io Desktop are not mandatory dependencies. Optional adapters must report availability honestly.
-
-## Delivery note
-
-This matrix describes the combined integrated candidate and deliberate scope decisions. Gitea publication and Hermes runtime installation are separate gates and must not be inferred from this document.